TitlePolybivalency and disordered proteins in ordering macromolecular assemblies.
Publication TypeJournal Article
Year of Publication2015
AuthorsBarbar E, Nyarko A
JournalSemin Cell Dev Biol
Volume37
Pagination20-5
Date Published2015 Jan
ISSN1096-3634
KeywordsAnimals, Cell Physiological Phenomena, Cytoplasmic Dyneins, Intrinsically Disordered Proteins, Multiprotein Complexes, Signal Transduction, Thermodynamics
Abstract

Intrinsically disordered proteins (IDPs) are prevalent in macromolecular assemblies and are thought to mediate protein recognition in complex regulatory processes and signaling pathways. The formation of a polybivalent scaffold is a key process by which IDPs drive early steps in macromolecular assemblies. Three intrinsically disordered proteins, IC, Swallow and Nup159, are core components, respectively, of cytoplasmic dynein, bicoid mRNA localization apparatus, and nuclear pore complexes. In all three systems, the hub protein LC8 recognizes on the IDP, short linear motifs that are fully disordered in the apo form, but adopt a β-strand when bound to LC8. The IDP/LC8 complex forms a bivalent scaffold primed to bind additional bivalent ligands. Scaffold formation also promotes self-association and/or higher order organization of the IDP components at a site distant from LC8 binding. Rigorous thermodynamic analyses imply that association of additional bivalent ligands is driven by entropic effects where the first binding event is weak but subsequent binding of additional ligands occurs with higher affinity. Here, we review specific examples of macromolecular assemblies in which polybivalency of aligned IDP duplexes not only enhances binding affinity and results in formation of a stable complex but also compensates unfavorable steric and enthalpic interactions. We propose that polybivalent scaffold assembly involving IDPs and LC8-like proteins is a general process in the cell biology of a class of multi-protein structures that are stable yet fine-tuned for diverse cellular requirements.

DOI10.1016/j.semcdb.2014.09.016
Alternate JournalSemin. Cell Dev. Biol.
PubMed ID25263009
PubMed Central IDPMC4339520
Grant ListR01 GM084276 / GM / NIGMS NIH HHS / United States
GM 084276 / GM / NIGMS NIH HHS / United States